Course: Methods of Microscopy

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Course title Methods of Microscopy
Course code TUFMI/TP4MM
Organizational form of instruction Lecture + Lesson
Level of course Bachelor
Year of study not specified
Semester Summer
Number of ECTS credits 3
Language of instruction Czech
Status of course Compulsory, Optional
Form of instruction Face-to-face
Work placements This is not an internship
Recommended optional programme components None
Lecturer(s)
  • Mráček Aleš, prof. Mgr. Ph.D.
  • Kadlečková Markéta, Ing. Ph.D.
  • Kocourková Karolína, Ing. Ph.D.
  • Minařík Antonín, doc. Ing. Ph.D.
  • Mikulka Filip, Ing.
Course content
1. Basic properties of imaging in a light microscope (optical scheme, resolution, magnification, depth of field). 2. Light microscope components and their properties. 3. Imaging methods: classical microscope, stereomicroscope, light and dark field, phase contrast. 4. Imaging methods: interference, polarization, ultraviolet, infrared and fluorescence microscopy. Confocal microscope. 5. Distribution of phenomena in the interaction of electrons with a solid. Basic principles of electron optics, electrostatic and magnetic lenses and their aberrations. Construction and principle of operation of a scanning electron microscope. Display parameters (resolution, depth of field and contrast). 6. Construction and principle of transmission electron microscope operation. Display parameters (resolution, depth of field and contrast). 7. Preparation of samples for electron microscopy (fixation, evaporation, microtome, method, freeze-fracture), analytical electron microscopy. 8. Scanning probe microscopy, basic principles of these methods, possibilities of use, advantages and disadvantages. 9. STM (scanning tunneling microscopy), AFM (atomic force microscopy).

Learning activities and teaching methods
Lecturing, Simple experiments
  • Participation in classes - 42 hours per semester
  • Preparation for examination - 18 hours per semester
prerequisite
Knowledge
Knowledge of physics.
Knowledge of physics.
learning outcomes
describe the parts of an optical microscope and their function
describe the parts of an optical microscope and their function
justify the use of imaging methods (interference, polarisation, ultraviolet, infrared and fluorescence microscopy)
justify the use of imaging methods (interference, polarisation, ultraviolet, infrared and fluorescence microscopy)
describe the design and principle of operation of a scanning electron microscope
describe the design and principle of operation of a scanning electron microscope
describe the design and principle of operation of a transmission electron microscope
describe the design and principle of operation of a transmission electron microscope
describe the design and working principle of scanning probe microscopy
describe the design and working principle of scanning probe microscopy
Skills
select the appropriate method for a particular sample
select the appropriate method for a particular sample
propose the use of an optical microscope
propose the use of an optical microscope
propose the use of a scanning electron microscope
propose the use of a scanning electron microscope
propose the use of a transmission electron microscope
propose the use of a transmission electron microscope
propose the use of scanning probe microscopy
propose the use of scanning probe microscopy
teaching methods
Knowledge
Lecturing
Lecturing
Dialogic (Discussion, conversation, brainstorming)
Dialogic (Discussion, conversation, brainstorming)
Skills
Simple experiments
Simple experiments
Practice exercises
Practice exercises
assessment methods
Knowledge
Oral examination
Grade (Using a grade system)
Didactic test
Didactic test
Grade (Using a grade system)
Oral examination
Recommended literature
  • Dawes C.J. Introduction to Biological Electron Microscopy: Theory and Techniques. Vermont, 1988.
  • HAWKES P.V., SPENCE, J.C.H. Science of Microscopy. New York: Spriger, 2007. ISBN 978-0-387-25296-4.
  • Kalina T., Pokorný V. Základy elektronové mikroskopie pro biology. Praha, 1981. ISBN skriptum.
  • Kubínek, Roman. Mikroskopie skenující sondou. 1. vyd. V Olomouci : Vydavatelství Univerzity Palackého, 2003. ISBN 80-244-0602-0.
  • Murphy, Douglas B. Fundamentals of light microscopy and electronic imaging. New York : Wiley-Liss, 2001. ISBN 0-471-25391-X.
  • Williams, David Bernard. Transmission electron microscopy : a textbook for materials science. 2nd ed. New York : Springer, 2009. ISBN 978-0-387-76500-6.


Study plans that include the course
Faculty Study plan (Version) Category of Branch/Specialization Recommended year of study Recommended semester